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Publications

Year Title Authors Journal
2017 An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing Aleksey V. Zimin, Kristian A. Stevens, Marc W Crepeau, Daniela Puiu, Jill L. Wegrzyn, James A. Yorke, Charles H. Langley, David B. Neale and Steven L. Salzberg GigaScience
2016 Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana) Daniel Gonzalez-Ibeas, Pedro J. Martinez-Garcia, Randi A. Famula, Annette Delfino-Mix, Kristian A. Stevens, Carol A. Loopstra, Charles H. Langley, David B. Neale and Jill L. Wegrzyn G3: Genes, Genomes, Genetics
2016 Sequence of the Sugar Pine Megagenome Kristian A. Stevens, Jill L. Wegrzyn, Aleksey Zimin, Daniela Puiu, Marc Crepeau, Charis Cardeno, Robin Paul, Daniel Gonzalez-Ibeas, Maxim Koriabine, Ann E. Holtz-Morris, Pedro J. Martínez-García, Uzay U. Sezen, Guillaume Marçais, Kathy Jermstad, Patrick E. McGuire, Carol A. Loopstra, John M. Davis, Andrew Eckert, Pieter de Jong, James A. Yorke, Steven L. Salzberg, David B. Neale and Charles H. Langley Genetics
2014 Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation Wegrzyn J.L., Leichty J.D., Stevens K.A., Wu L.S., Loopstra C.A., Vasquez-Gross H.A., Dougherty W.M., Lin B.Y., Zieve J.J., Martínez-García P.J., Holt C., Yandell M.Z., Zimin A.V., Yorke J.A., Crepeau M.W., Puiu D.S., Salzberg S.L., Dejong P.J., Mockaitis K., Main D., Langley C.H., Neale D.B. Genetics
2014 Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies Neale D.B., Wegrzyn J.L., Stevens K.A., Zimin A.V., Puiu D., Crepeau M.W., Cardeno C., Koriabine M., Holtz-Morris A.E., Leichty J.D., Martínez-García P.J., Vasquez-Gross H.A., Lin B.Y., Zieve J.J., Dougherty W.M., Fuentes-Soriano S., Wu L.S., Gilbert D., Marçais G., Roberts M., Holt C., Yandell M., Davis J.M., Smith K.E., Dean J.F., Lorenz W.W., Whetten R.W., Sederoff R., Wheeler N., McGuire P.E., Main D., Loopstra C.A., Mockaitis K., Dejong P.J., Yorke J.A., Salzberg S.L., Langley C.H. Genome Biology
2014 Sequencing and Assembly of the 22-Gb Loblolly Pine Genome Zimin A., Stevens K.A., Crepeau M.W., Holtz-Morris A., Koriabine M., Marçais G., Puiu D., Roberts M., Wegrzyn J.L., de Jong P.J., Neale D.B., Salzberg S.L., Yorke J.A., Langley C.H. Genetics
2013 Open access to tree genomes: the path to a better forest Neale D.B., Langley C.H., Salzberg S.L., Wegrzyn J.L. Genome Biology
2013 Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences Wegrzyn J.L., Lin B.Y., Zieve J.J., Dougherty W.M., Martinez-Garcia P.J., Koriabine M., Holtz-Morris A., deJong P., Crepeau M., Langley C.H., Puiu D., Salzberg S.L., Neale D.B., Stevens K.A. PLoS ONE